Structural studies of ornithine carbamoyltransferase from various pathogens
Shabalin, I.G., Winsor, J., Grimshaw, S., Osinski, T., Chordia, M.D., Anderson, W.F., Minor, W.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ornithine carbamoyltransferase | 358 | Vibrio vulnificus CMCP6 | Mutation(s): 0  Gene Names: argF, VV1_1466 EC: 2.1.3.3 | ||
UniProt | |||||
Find proteins for Q8DCF5 (Vibrio vulnificus (strain CMCP6)) Explore Q8DCF5  Go to UniProtKB:  Q8DCF5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8DCF5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PE5 Query on PE5 | EA [auth C], F [auth A], Z [auth B] | 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL C18 H38 O9 CUDPPTPIUWYGFI-UHFFFAOYSA-N | |||
CP Query on CP | DA [auth C], E [auth A], R [auth B] | PHOSPHORIC ACID MONO(FORMAMIDE)ESTER C H4 N O5 P FFQKYPRQEYGKAF-UHFFFAOYSA-N | |||
NVA Query on NVA | BA [auth C], D [auth A], Q [auth B] | NORVALINE C5 H11 N O2 SNDPXSYFESPGGJ-BYPYZUCNSA-N | |||
PEG Query on PEG | AA [auth B] FA [auth C] G [auth A] GA [auth C] H [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
CL Query on CL | CA [auth C] IA [auth C] J [auth A] N [auth A] T [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 74.262 | α = 90 |
b = 80.911 | β = 90 |
c = 152.733 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-3000 | data collection |
HKL-3000 | phasing |
MOLREP | phasing |
REFMAC | refinement |
Coot | model building |
HKL-3000 | data reduction |
HKL-3000 | data scaling |