6UZ4 | pdb_00006uz4

Solution structure of AGL55-Kringle 2 complex

PDB DOI: https://doi.org/10.2210/pdb6UZ4/pdb
BMRB: 30686

Classification: PROTEIN BINDING
Organism(s): Homo sapiens, Streptococcus pyogenes NS88.2
Expression System: Komagataella pastoris, Escherichia coli
Mutation(s): Yes

Deposited: 2019-11-14 Released: 2020-12-09
Deposition Author(s): Qiu, C., Yuan, Y., Castellino, F.J.
Funding Organization(s): National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 2000
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 6UZ4

This is version 1.1 of the entry. See complete history.

Literature

Structural evolution of the A-domain in plasminogen-binding Group A streptococcal M-protein reflects improved adaptability of the pathogen to the host

Qiu, C., Yuan, Y., Ploplis, V.A., Castellino, F.J.

To be published.

Macromolecule Content

Total Structure Weight: 16.91 kDa
Atom Count: 1,127
Modeled Residue Count: 137
Deposited Residue Count: 144
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Plasminogen	A	87	Homo sapiens	Mutation(s): 3 Gene Names: PLG EC: 3.4.21.7
UniProt & NIH Common Fund Data Resources
Find proteins for P00747 (Homo sapiens) Explore P00747 Go to UniProtKB: P00747
PHAROS: P00747 GTEx: ENSG00000122194
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00747
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
M protein	B	57	Streptococcus pyogenes NS88.2	Mutation(s): 0 Gene Names: emm
UniProt
Find proteins for M4I022 (Streptococcus pyogenes) Explore M4I022 Go to UniProtKB: M4I022
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	M4I022
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 2000
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-12-09

Deposition Author(s):

Castellino, F.J.

Funding Organization	Location	Grant Number
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)	United States	HL013423

Revision History (Full details and data files)

Version 1.0: 2020-12-09
Type: Initial release
Version 1.1: 2024-11-20
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.