Structural insights into an evolutionary turning-point of photosystem I from prokaryotes to eukaryotes
Kato, K., Nagao, R., Ueno, Y., Yokono, M., Suzuki, T., Jiang, T.Y., Dohmae, N., Akita, F., Akimoto, S., Miyazaki, N., Shen, J.R.(2022) Biorxiv
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
(2022) Biorxiv
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A1 | 752 | Cyanophora paradoxa | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for P48112 (Cyanophora paradoxa) Explore P48112 Go to UniProtKB: P48112 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P48112 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A2 | 737 | Cyanophora paradoxa | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for P48113 (Cyanophora paradoxa) Explore P48113 Go to UniProtKB: P48113 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P48113 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I iron-sulfur center | 81 | Cyanophora paradoxa | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for P31173 (Cyanophora paradoxa) Explore P31173 Go to UniProtKB: P31173 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P31173 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit II, cyanelle | 220 | Cyanophora paradoxa | Mutation(s): 0 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for Q9T4W8 (Cyanophora paradoxa) Explore Q9T4W8 Go to UniProtKB: Q9T4W8 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9T4W8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IV | 70 | Cyanophora paradoxa | Mutation(s): 0 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for P48114 (Cyanophora paradoxa) Explore P48114 Go to UniProtKB: P48114 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P48114 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit III | 186 | Cyanophora paradoxa | Mutation(s): 0 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for P48115 (Cyanophora paradoxa) Explore P48115 Go to UniProtKB: P48115 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P48115 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit VIII | G [auth I] | 35 | Cyanophora paradoxa | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for P48116 (Cyanophora paradoxa) Explore P48116 Go to UniProtKB: P48116 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P48116 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IX | H [auth J] | 40 | Cyanophora paradoxa | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for P48117 (Cyanophora paradoxa) Explore P48117 Go to UniProtKB: P48117 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P48117 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit PsaK 1 | I [auth K] | 157 | Cyanophora paradoxa | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit XI | J [auth L] | 146 | Cyanophora paradoxa | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit XII | K [auth M] | 31 | Cyanophora paradoxa | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for P48185 (Cyanophora paradoxa) Explore P48185 Go to UniProtKB: P48185 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P48185 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 7 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CLA Query on CLA | AA [auth A] AB [auth A] AC [auth B] BA [auth A] BB [auth A] | CHLOROPHYLL A C55 H72 Mg N4 O5 ATNHDLDRLWWWCB-AENOIHSZSA-M | |||
CL0 Query on CL0 | L [auth A] | CHLOROPHYLL A ISOMER C55 H72 Mg N4 O5 VIQFHHZSLDFWDU-DVXFRRMCSA-M | |||
LMG Query on LMG | XC [auth B] | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C45 H86 O10 DCLTVZLYPPIIID-CVELTQQQSA-N | |||
LHG Query on LHG | KB [auth A], LB [auth A] | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C38 H75 O10 P BIABMEZBCHDPBV-MPQUPPDSSA-N | |||
BCR Query on BCR | AD [auth F] BD [auth F] DD [auth I] FB [auth A] FD [auth J] | BETA-CAROTENE C40 H56 OENHQHLEOONYIE-JLTXGRSLSA-N | |||
PQN Query on PQN | DB [auth A], TC [auth B] | PHYLLOQUINONE C31 H46 O2 MBWXNTAXLNYFJB-NKFFZRIASA-N | |||
SF4 Query on SF4 | EB [auth A], YC [auth C], ZC [auth C] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | 1.13_2998 |
RECONSTRUCTION | RELION | 3 |