7SSH

Single chain trimer HLA-A*02:01 (Y108A) with HPV.16 E7 peptide YMLDLQPETTDLYC


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.73 Å
  • R-Value Free: 0.294 
  • R-Value Work: 0.253 
  • R-Value Observed: 0.255 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Effects of HLA single chain trimer design on peptide presentation and stability

Kathryn, K.A.K.Rupert, P.B.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Protein E7 peptide,Beta-2-microglobulin,MHC class I antigen chimera
A,
C,
E,
G,
I,
429Human papillomavirus type 16Pongo pygmaeusHomo sapiens
This entity is chimeric
Mutation(s): 1 
Gene Names: E7B2MHLA-A
UniProt
Find proteins for P16213 (Pongo pygmaeus)
Explore P16213 
Go to UniProtKB:  P16213
Find proteins for P03129 (Human papillomavirus type 16)
Explore P03129 
Go to UniProtKB:  P03129
Find proteins for A0A678ZGP6 (Homo sapiens)
Explore A0A678ZGP6 
Go to UniProtKB:  A0A678ZGP6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsA0A678ZGP6P03129P16213
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
VHH
B,
D,
F,
H,
J,
116Lama glamaMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.73 Å
  • R-Value Free: 0.294 
  • R-Value Work: 0.253 
  • R-Value Observed: 0.255 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 117.681α = 77.598
b = 118.924β = 77.597
c = 274.991γ = 89.947
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-23
    Type: Initial release