Download MendeleyCrystal Structure of Cystathionine beta lyase from Klebsiella aerogenes, PLP adduct with Alanine (C2 form)
Liu, L., Lovell, S., Battaile, K.P., Cooper, A.To be published.
8SAB
Crystal Structure of Cystathionine beta lyase from Klebsiella aerogenes, PLP adduct with Alanine (C2 form)
- PDB DOI: https://doi.org/10.2210/pdb8SAB/pdb
- Classification: LYASE
- Organism(s): Klebsiella aerogenes KCTC 2190
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2023-03-31 Released: 2023-04-12
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Institutes of Health/Office of the Director
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.182
- R-Value Work: 0.159
- R-Value Observed: 0.160
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cystathionine beta-lyase | 403 | Klebsiella aerogenes KCTC 2190 | Mutation(s): 2 Gene Names: EAE_03480 EC: 4.4.1.8 |  | |
UniProt | |||||
Find proteins for A0A0H3FMF8 (Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / CCUG 1429 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006 / CDC 819-56)) Explore A0A0H3FMF8 Go to UniProtKB: A0A0H3FMF8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3FMF8 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 7 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PP3 (Subject of Investigation/LOI) Query on PP3 | D [auth A], L [auth B] | ALANYL-PYRIDOXAL-5'-PHOSPHATE C11 H17 N2 O7 P WACJCHFWJNNBPR-ZETCQYMHSA-N |  | ||
| PLP (Subject of Investigation/LOI) Query on PLP | E [auth A], M [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| LYS Query on LYS | C [auth A], K [auth B] | LYSINE C6 H15 N2 O2 KDXKERNSBIXSRK-YFKPBYRVSA-O |  | ||
| TRS Query on TRS | I [auth A] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
| MPD Query on MPD | F [auth A] G [auth A] H [auth A] N [auth B] O [auth B] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
| PO4 (Subject of Investigation/LOI) Query on PO4 | Q [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| GOL Query on GOL | J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.182
- R-Value Work: 0.159
- R-Value Observed: 0.160
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M38SAB
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 87.325 | α = 90 |
| b = 130.522 | β = 103.96 |
| c = 82.366 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-04-12 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | 75N93022C00036 |
| National Institutes of Health/Office of the Director | United States | OD030394 |
Revision History (Full details and data files)
- Version 1.0: 2023-04-12
Type: Initial release
