8WUT

SpCas9-MMLV RT-pegRNA-target DNA complex (initiation)

• PDB DOI: https://doi.org/10.2210/pdb8WUT/pdb
• NAKB: 8WUT
• EM Map EMD-37859: EMDB EMDataResource

• Classification: RNA BINDING PROTEIN
• Organism(s): Streptococcus pyogenes serotype M1, Moloney murine leukemia virus, Streptococcus pyogenes
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG, Teseptimavirus
• Mutation(s): Yes 


• Deposited: 2023-10-21 Released: 2024-06-05 
• Deposition Author(s): Shuto, Y., Nakagawa, R., Hoki, M., Omura, S.N., Hirano, H., Itoh, Y., Nureki, O.
• Funding Organization(s): Japan Agency for Medical Research and Development (AMED)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural basis for pegRNA-guided reverse transcription by a prime editor

Shuto, Y., Nakagawa, R., Zhu, S., Hoki, M., Omura, S.N., Hirano, H., Itoh, Y., Zhang, F., Nureki, O.

(2024) Nature 631: 224-231

• DOI: https://doi.org/10.1038/s41586-024-07497-8

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 282.87 kDa 
• Atom Count: 18,316 
• Modelled Residue Count: 1,956 
• Deposited Residue Count: 2,081 
• Unique protein chains: 2
• Unique nucleic acid chains: 3
• Unique hybrid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR-associated endonuclease Cas9/Csn1	A	1,367	Streptococcus pyogenes serotype M1	Mutation(s): 2  Gene Names: cas9
UniProt
Find proteins for Q99ZW2 (Streptococcus pyogenes serotype M1) Explore Q99ZW2  Go to UniProtKB:  Q99ZW2

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Gag-Pol polyprotein	B [auth E]	496	Moloney murine leukemia virus	Mutation(s): 6  Gene Names: gag-pro-pol
UniProt
Find proteins for Q8UN00 (Moloney murine leukemia virus) Explore Q8UN00  Go to UniProtKB:  Q8UN00

Entity ID: 3
Molecule	Chains	Length	Organism	Image
DNA (51-MER)	C	51	Streptococcus pyogenes

Entity ID: 4
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*TP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*TP*AP*CP*TP*AP*G)-3')	D	17	Streptococcus pyogenes

Entity ID: 5
Molecule	Chains	Length	Organism	Image
RNA (115-MER)	E [auth B]	115	Streptococcus pyogenes

Entity ID: 6
Molecule	Chains	Length	Organism	Image
DNA/RNA (35-MER)	F	35	Streptococcus pyogenes

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-06-05 
Deposition Author(s): Shuto, Y., Nakagawa, R., Hoki, M., Omura, S.N., Hirano, H., Itoh, Y., Nureki, O.

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Funding Organization	Location	Grant Number
Japan Agency for Medical Research and Development (AMED)	Japan	JP23ama121012

Revision History  

• Version 1.0: 2024-06-05
  Type: Initial release
  
• Version 1.1: 2024-06-12
  Changes: Data collection, Database references, Structure summary
• Version 1.2: 2024-07-17
  Changes: Data collection, Database references
• Version 1.3: 2024-09-04
  Changes: Data collection, Database references