Pairwise Structure Alignment

09/21

Use the Pairwise Structure Alignment tool to view sequence alignments and superposed 3D structures.

The Pairwise Structure Alignment tool allows for calculating pairwise structure alignments using different alignment methods. Comparisons can be made for any protein in the PDB archive and/or uploaded data files. A detailed overview is available.

A standalone version of the Mol* 3D viewer supports pairwise structure alignment based on sequence; an overview is also available.

New Features Index

• 12/21 wwPDB News: Paper Published in Glycobiology

• 12/15 Remove Redundancy in Search Results

• 12/14 wwPDB News: Deposition of Half-maps for Certain EM Entries to Become Mandatory

• 12/08 wwPDB News: Watch Workshops on Open-Source Tools for Chemistry

• 12/06 wwPDB News: Watch Presentations from the May PDB50 Celebration

• 11/17 New Chemical Sketch Tool

• 10/27 wwPDB News: Obituary for John Westbrook

• 10/19 Take the RCSB.org User Survey and Win

• 10/18 New PDB Citation MeSH Network Explorer

• 10/07 User Survey: Tell RCSB PDB About Your Interests

• 09/24 wwPDB News: PDBx/mmCIF data files to include PI information

• 09/21 Pairwise Structure Alignment

• 09/14 wwPDB News: Improved Access to Chemical Component Definitions and Archive Inventories

• 09/07 Explore Ligand Quality

• 08/31 Small Molecule Search Results Options

• 08/23 wwPDB News: PDB adopts a standard Creative Commons open source license

• 08/11 Search by Funding

• 08/01 wwPDB News: Extended PDB IDs and PDB DOIs now available in PDBx/mmCIF files

• 07/26 wwPDB News: PDBx/mmCIF data files to include PI information

• 07/20 Integrating PDB Data with Glycosylation Resources

• 07/13 Explore Genome-Protein Relationships

• 07/06 wwPDB News: Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

• 06/29 Sequence Redundancy Statistics

• 06/20 Access Membrane Protein Annotations

• 06/15 Paper Published

• 06/08 Scientific Software Developers and Postdocs

• 06/01 wwPDB News: Consistent Format for Validation and Coordinate Data

• 05/30 wwPDB News: Modifications to support for SHEET and ligand SITE records in June 2021

• 05/25 wwPDB News: How the Protein Data Bank Changed Biology

• 05/18 3D Protein Feature View

• 05/10 Scientific Software Developers and Postdocs

• 04/24 EXTENDED: Enter the 2021 CellPAINT Contest by May 6

• 04/20 wwPDB News: Future Planning: Entries with extended PDB and CCD ID codes will be distributed in PDBx/mmCIF format only

• 04/15 Scientific Software Developers and Postdocs

• 04/09 Developers: HTTPS enforcement starts May 10

• 04/01 Enter the 2021 CellPAINT Contest by May 1

• 03/16 wwPDB News: Modifications to support for SHEET and ligand SITE records in June 2021

• 03/09 Calculate Pairwise Structure Alignments

• 02/16 Search for Structural Motifs

• 01/18 IQB and ERN: Electron Microscopy Community Voice of the Customer

• 01/12 wwPDB News: wwPDB EM Validation Reports Now Publicly Available