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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Waszkowycz, B."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Homo sapiens (23)
	Bos taurus (1)

Taxonomy

Eukaryota (24)

Experimental Method

X-RAY DIFFRACTION (24)

Polymer Entity Type

Protein (24)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (10)
	2.5 - 3.0 (7)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (13)
	2015 - 2019 (8)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (15)
	Hydrolases (6)
	Oxidoreductases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (17)
	Cyclic (8)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	Artifacts (9)
	Alpha and beta proteins (a/b) (7)
	All beta proteins (4)
	All alpha proteins (3)

AllSelected

1 to 24 of 24 Structures

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1EB2 \| pdb_00001eb2	Download File View File

Trypsin inhibitor complex (BPO)

Wilkinson, K.W., Young, S.C., Liebeschuetz, J.W., Brady, R.L.

(2002) J Med Chem 45: 1221

Released	2002-02-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	BPO, CA, SO4

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4E4L \| pdb_00004e4l	Download File View File

JAK1 kinase (JH1 domain) in complex with compound 30

Eigenbrot, C.

(2012) J Med Chem 55: 5901-5921

Released	2012-05-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK1 (protein)
Unique Ligands	0NH

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4E4M \| pdb_00004e4m	Download File View File

JAK2 kinase (JH1 domain) in complex with compound 30

Eigenbrot, C.

(2012) J Med Chem 55: 5901-5921

Released	2012-05-30
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK2 (protein)
Unique Ligands	0NH

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4E4N \| pdb_00004e4n	Download File View File

JAK1 kinase (JH1 domain) in complex with compound 49

Eigenbrot, C.

(2012) J Med Chem 55: 5901-5921

Released	2012-05-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK1 (protein)
Unique Ligands	0NL

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4E5W \| pdb_00004e5w	Download File View File

JAK1 kinase (JH1 domain) in complex with compound 26

Murray, J.M.

(2012) J Med Chem 55: 5901-5921

Released	2012-05-30
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK1 (protein)
Unique Ligands	0NT, PEG

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4E6D \| pdb_00004e6d	Download File View File

JAK2 kinase (JH1 domain) triple mutant in complex with compound 7

Murray, J.M.

(2012) J Med Chem 55: 5901-5921

Released	2012-05-30
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK2 (protein)
Unique Ligands	0NU, GOL

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4E6Q \| pdb_00004e6q	Download File View File

JAK2 kinase (JH1 domain) triple mutant in complex with compound 12

Murray, J.M.

(2012) J Med Chem 55: 5901-5921

Released	2012-05-30
Method	X-RAY DIFFRACTION 1.948 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK2 (protein)
Unique Ligands	0NV

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4EZJ \| pdb_00004ezj	Download File View File

Potent and Selective Inhibitors of PI3K-delta: Obtaining Isoform Selectivity from the Affinity Pocket and Tryptophan Shelf

Murray, J.M.

(2012) Bioorg Med Chem Lett 22: 4296-4302

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform (protein)
Unique Ligands	0SC

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4EZK \| pdb_00004ezk	Download File View File

Potent and Selective Inhibitors of PI3K-delta: Obtaining Isoform Selectivity from the Affinity Pocket and Tryptophan Shelf

Murray, J.M.

(2012) Bioorg Med Chem Lett 22: 4296-4302

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.803 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform (protein)
Unique Ligands	0SD

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4EZL \| pdb_00004ezl	Download File View File

Potent and Selective Inhibitors of PI3K-delta: Obtaining Isoform Selectivity from the Affinity Pocket and Tryptophan Shelf

Murray, J.M.

(2012) Bioorg Med Chem Lett 22: 4296-4302

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform (protein)
Unique Ligands	0SE

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4I5C \| pdb_00004i5c	Download File View File

The Jak1 kinase domain in complex with inhibitor

Fong, R., Lupardus, P.J.

(2013) Bioorg Med Chem Lett 23: 3592-3598

Released	2013-05-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK1 (protein)
Unique Ligands	C5I, EDO

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4IDT \| pdb_00004idt	Download File View File

Crystal Structure of NIK with 11-bromo-5,6,7,8-tetrahydropyrimido[4',5':3,4]cyclohepta[1,2-b]indol-2-amine (T28)

Liu, J., Sudom, A., Wang, Z.

(2013) Bioorg Med Chem Lett 23: 1238-1244

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase kinase kinase 14 (protein)
Unique Ligands	T28

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4IDV \| pdb_00004idv	Download File View File

Crystal Structure of NIK with compound 4-{3-[2-amino-5-(2-methoxyethoxy)pyrimidin-4-yl]-1H-indol-5-yl}-2-methylbut-3-yn-2-ol (13V)

Liu, J., Sudom, A., Wang, Z.

(2013) Bioorg Med Chem Lett 23: 1238-1244

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase kinase kinase 14 (protein)
Unique Ligands	13V

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4WLB \| pdb_00004wlb	Download File View File

Crystal structure of RORc in complex with a partial inverse agonist compound

Boenig, G., Hymowitz, S.G., Kiefer, J.R.

(2014) Bioorg Med Chem Lett 24: 5769-5776

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.702 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor ROR-gamma (protein) SRC-1 peptide (protein)
Unique Ligands	3QQ, TLA

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5AMN \| pdb_00005amn	Download File View File

The Discovery of 2-Substituted Phenol Quinazolines as Potent and Selective RET Kinase Inhibitors

Newton, R., Bowler, K., Burns, E.M., Chapman, P., Fairweather, E., Fritzl, S., Goldberg, K., Hamilton, N.M., Holt, S.V., Hopkins, G.V., Jones, S.D., Jordan, A.M., Lyons, A., McDonald, N.Q., Maguire, L.A., Mould, D.P., Purkiss, A.G., Small, H.F., Stowell, A., Thomson, G.J., Waddell, I.D., Waszkowycz, B., Watson, A.J., Ogilvie, D.J.

(2016) Eur J Med Chem 112: 20-32

Released	2016-02-17
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Homo sapiens
Macromolecule	PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET (protein)
Unique Ligands	DTQ, FMT

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5L57 \| pdb_00005l57	Download File View File

Crystal structure of Iso-citrate Dehydrogenase R132H in complex with a novel inhibitor (compound 13a)

Levy, C.

(2016) J Med Chem 59: 11120-11137

Released	2016-12-14
Method	X-RAY DIFFRACTION 2.695 Å
Organisms	Homo sapiens
Macromolecule	Isocitrate dehydrogenase [NADP] cytoplasmic (protein)
Unique Ligands	6N3, NDP

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5L58 \| pdb_00005l58	Download File View File

Crystal structure of Iso-citrate Dehydrogenase 1 [IDH1 (R132H)] in complex with a novel inhibitor (Compound 2)

Levy, C.

(2016) J Med Chem 59: 11120-11137

Released	2016-12-14
Method	X-RAY DIFFRACTION 3.04 Å
Organisms	Homo sapiens
Macromolecule	Isocitrate dehydrogenase [NADP] cytoplasmic (protein)
Unique Ligands	6MX, NDP

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5LHB \| pdb_00005lhb	Download File View File

POLYADPRIBOSYL GLYCOSIDASE IN COMPLEX WITH PDD00017262

Tucker, J., Barkauskaite, E.

(2016) ACS Chem Biol 11: 3179-3190

Released	2016-10-12
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	Poly(ADP-ribose) glycohydrolase (protein)
Unique Ligands	6WJ, DMS, SO4

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6HMK \| pdb_00006hmk	Download File View File

POLYADPRIBOSYL GLYCOHYDROLASE IN COMPLEX WITH PDD00016690

Tucker, J.A., Barkauskaite, E.

(2018) J Med Chem 61: 10767-10792

Released	2018-11-14
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Homo sapiens
Macromolecule	Poly(ADP-ribose) glycohydrolase (protein)
Unique Ligands	7JC, DMS, GOL, SO4

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6HML \| pdb_00006hml	Download File View File

POLYADPRIBOSYL GLYCOSIDASE IN COMPLEX WITH PDD00017299

Tucker, J.A., Barkauskaite, E.

(2018) J Med Chem 61: 10767-10792

Released	2018-11-14
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Poly(ADP-ribose) glycohydrolase (protein)
Unique Ligands	73L, DMS, GOL, SO4

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6HMM \| pdb_00006hmm	Download File View File

POLYADPRIBOSYL GLYCOHYDROLASE IN COMPLEX WITH PDD00013907

Tucker, J.A., Brassington, C., Hassall, G.

(2018) J Med Chem 61: 10767-10792

Released	2018-11-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Poly(ADP-ribose) glycohydrolase (protein)
Unique Ligands	7JB, DMS, GOL, SO4

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6HMN \| pdb_00006hmn	Download File View File

POLYADPRIBOSYL GLYCOSIDASE IN COMPLEX WITH PDD00014909

Tucker, J.A., Brassington, C., Hassall, G.

(2018) J Med Chem 61: 10767-10792

Released	2018-11-14
Method	X-RAY DIFFRACTION 2.87 Å
Organisms	Homo sapiens
Macromolecule	Poly(ADP-ribose) glycohydrolase (protein)
Unique Ligands	70J, DMS, GOL, SO4

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6I82 \| pdb_00006i82	Download File View File

Crystal structure of partially phosphorylated RET V804M tyrosine kinase domain complexed with PDD00018412

Burschowsky, D., Seewooruthun, C., Bayliss, R., Carr, M.D., Echalier, A., Jordan, A.M.

(2020) ACS Med Chem Lett 11: 497-505

Released	2020-03-11
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Proto-oncogene tyrosine-protein kinase receptor Ret (protein)
Unique Ligands	CL, EDO, FMT, H6W

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6I83 \| pdb_00006i83	Download File View File

Crystal structure of phosphorylated RET V804M tyrosine kinase domain complexed with PDD00018366

Burschowsky, D., Seewooruthun, C., Bayliss, R., Carr, M.D., Echalier, A., Jordan, A.M.

(2020) ACS Med Chem Lett 11: 497-505

Released	2020-03-11
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Proto-oncogene tyrosine-protein kinase receptor Ret (protein)
Unique Ligands	FMT, H72

1 to 24 of 24 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1EB2 | pdb_00001eb2

4E4L | pdb_00004e4l

4E4M | pdb_00004e4m

4E4N | pdb_00004e4n

4E5W | pdb_00004e5w

4E6D | pdb_00004e6d

4E6Q | pdb_00004e6q

4EZJ | pdb_00004ezj

4EZK | pdb_00004ezk

4EZL | pdb_00004ezl

4I5C | pdb_00004i5c

4IDT | pdb_00004idt

4IDV | pdb_00004idv

4WLB | pdb_00004wlb

5AMN | pdb_00005amn

5L57 | pdb_00005l57

5L58 | pdb_00005l58

5LHB | pdb_00005lhb

6HMK | pdb_00006hmk

6HML | pdb_00006hml

6HMM | pdb_00006hmm

6HMN | pdb_00006hmn

6I82 | pdb_00006i82

6I83 | pdb_00006i83