7ZDM

Complex I from Ovis aries at pH5.5, Closed state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A universal coupling mechanism of respiratory complex I.

Kravchuk, V.Petrova, O.Kampjut, D.Wojciechowska-Bason, A.Breese, Z.Sazanov, L.

(2022) Nature 609: 808-814

  • DOI: https://doi.org/10.1038/s41586-022-05199-7
  • Primary Citation of Related Structures:  
    7P61, 7P62, 7P63, 7P64, 7P69, 7P7C, 7P7E, 7P7J, 7P7K, 7P7L, 7P7M, 7Z7R, 7Z7S, 7Z7T, 7Z7V, 7Z80, 7Z83, 7Z84, 7ZC5, 7ZCI, 7ZD6, 7ZDH, 7ZDJ, 7ZDM, 7ZDP, 7ZEB

  • PubMed Abstract: 

    Complex I is the first enzyme in the respiratory chain, which is responsible for energy production in mitochondria and bacteria 1 . Complex I couples the transfer of two electrons from NADH to quinone and the translocation of four protons across the membrane 2 , but the coupling mechanism remains contentious. Here we present cryo-electron microscopy structures of Escherichia coli complex I (EcCI) in different redox states, including catalytic turnover. EcCI exists mostly in the open state, in which the quinone cavity is exposed to the cytosol, allowing access for water molecules, which enable quinone movements. Unlike the mammalian paralogues 3 , EcCI can convert to the closed state only during turnover, showing that closed and open states are genuine turnover intermediates. The open-to-closed transition results in the tightly engulfed quinone cavity being connected to the central axis of the membrane arm, a source of substrate protons. Consistently, the proportion of the closed state increases with increasing pH. We propose a detailed but straightforward and robust mechanism comprising a 'domino effect' series of proton transfers and electrostatic interactions: the forward wave ('dominoes stacking') primes the pump, and the reverse wave ('dominoes falling') results in the ejection of all pumped protons from the distal subunit NuoL. This mechanism explains why protons exit exclusively from the NuoL subunit and is supported by our mutagenesis data. We contend that this is a universal coupling mechanism of complex I and related enzymes.


  • Organizational Affiliation

    Institute of Science and Technology Austria, Klosterneuburg, Austria.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialA [auth 1]464Ovis ariesMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for W5PUX0 (Ovis aries)
Explore W5PUX0 
Go to UniProtKB:  W5PUX0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5PUX0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial complex I, 24 kDa subunitB [auth 2]246Ovis ariesMutation(s): 0 
UniProt
Find proteins for W5NRY1 (Ovis aries)
Explore W5NRY1 
Go to UniProtKB:  W5NRY1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5NRY1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase core subunit S1C [auth 3]727Ovis ariesMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-49kDD [auth 4]463Ovis ariesMutation(s): 0 
UniProt
Find proteins for A0A6P3DZ89 (Ovis aries)
Explore A0A6P3DZ89 
Go to UniProtKB:  A0A6P3DZ89
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P3DZ89
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase core subunit S3E [auth 5]266Ovis ariesMutation(s): 0 
UniProt
Find proteins for W5PB27 (Ovis aries)
Explore W5PB27 
Go to UniProtKB:  W5PB27
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5PB27
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-20kDF [auth 6]223Ovis ariesMutation(s): 0 
UniProt
Find proteins for A0A6P7E5N1 (Ovis aries)
Explore A0A6P7E5N1 
Go to UniProtKB:  A0A6P7E5N1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P7E5N1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-23kDG [auth 9]217Ovis ariesMutation(s): 0 
UniProt
Find proteins for A0A6P3TFB2 (Ovis aries)
Explore A0A6P3TFB2 
Go to UniProtKB:  A0A6P3TFB2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P3TFB2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-9kDH [auth a]109Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6P3E7B5 (Ovis aries)
Explore A0A6P3E7B5 
Go to UniProtKB:  A0A6P3E7B5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P3E7B5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialI [auth b]124Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6P7EX23 (Ovis aries)
Explore A0A6P7EX23 
Go to UniProtKB:  A0A6P7EX23
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P7EX23
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrialJ [auth c]170Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for W5PE07 (Ovis aries)
Explore W5PE07 
Go to UniProtKB:  W5PE07
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5PE07
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase subunit A9K [auth d]380Ovis ariesMutation(s): 0 
UniProt
Find proteins for A0A6P3E3I5 (Ovis aries)
Explore A0A6P3E3I5 
Go to UniProtKB:  A0A6P3E3I5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P3E3I5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2L [auth e]99Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A8N7XJ49 (Ovis aries)
Explore A0A8N7XJ49 
Go to UniProtKB:  A0A8N7XJ49
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8N7XJ49
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial complex I, B13 subunitM [auth f]116Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A836ABR5 (Ovis aries)
Explore A0A836ABR5 
Go to UniProtKB:  A0A836ABR5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A836ABR5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase subunit A6N [auth g]140Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for W5QC06 (Ovis aries)
Explore W5QC06 
Go to UniProtKB:  W5QC06
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5QC06
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial complex I, B14.5a subunitO [auth h]114Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for W5P0I2 (Ovis aries)
Explore W5P0I2 
Go to UniProtKB:  W5P0I2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5P0I2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12P [auth i]145Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A8N7XJ18 (Ovis aries)
Explore A0A8N7XJ18 
Go to UniProtKB:  A0A8N7XJ18
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8N7XJ18
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl carrier proteinAA [auth X],
Q [auth j]
157Ovis ariesMutation(s): 0 
UniProt
Find proteins for W5NQT7 (Ovis aries)
Explore W5NQT7 
Go to UniProtKB:  W5NQT7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5NQT7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 3R [auth A]115Ovis ariesMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for O78753 (Ovis aries)
Explore O78753 
Go to UniProtKB:  O78753
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO78753
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 1S [auth H]318Ovis ariesMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for O78747 (Ovis aries)
Explore O78747 
Go to UniProtKB:  O78747
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO78747
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 6T [auth J]175Ovis ariesMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for O78757 (Ovis aries)
Explore O78757 
Go to UniProtKB:  O78757
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO78757
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 4LU [auth K]98Ovis ariesMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for O78754 (Ovis aries)
Explore O78754 
Go to UniProtKB:  O78754
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO78754
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 5V [auth L]606Ovis ariesMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for O78756 (Ovis aries)
Explore O78756 
Go to UniProtKB:  O78756
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO78756
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 4W [auth M]459Ovis ariesMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for O78755 (Ovis aries)
Explore O78755 
Go to UniProtKB:  O78755
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO78755
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 2X [auth N]347Ovis ariesMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for O78748 (Ovis aries)
Explore O78748 
Go to UniProtKB:  O78748
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO78748
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11Y [auth V]141Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A8N7XJ91 (Ovis aries)
Explore A0A8N7XJ91 
Go to UniProtKB:  A0A8N7XJ91
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8N7XJ91
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrialZ [auth W]189Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A8N7XJ68 (Ovis aries)
Explore A0A8N7XJ68 
Go to UniProtKB:  A0A8N7XJ68
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8N7XJ68
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8BA [auth Y]171Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A8N7XJG2 (Ovis aries)
Explore A0A8N7XJG2 
Go to UniProtKB:  A0A8N7XJG2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8N7XJG2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10CA [auth Z]175Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6P3EI17 (Ovis aries)
Explore A0A6P3EI17 
Go to UniProtKB:  A0A6P3EI17
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P3EI17
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrialDA [auth k]355Ovis ariesMutation(s): 0 
UniProt
Find proteins for A0A8N7XJK5 (Ovis aries)
Explore A0A8N7XJK5 
Go to UniProtKB:  A0A8N7XJK5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8N7XJK5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5EA [auth l]106Ovis ariesMutation(s): 0 
UniProt
Find proteins for A0A836D7R1 (Ovis aries)
Explore A0A836D7R1 
Go to UniProtKB:  A0A836D7R1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A836D7R1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase subunit A3FA [auth m]84Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A836A4Q3 (Ovis aries)
Explore A0A836A4Q3 
Go to UniProtKB:  A0A836A4Q3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A836A4Q3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3GA [auth n]98Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6P7DQB1 (Ovis aries)
Explore A0A6P7DQB1 
Go to UniProtKB:  A0A6P7DQB1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P7DQB1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 subunit C2HA [auth o]122Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for W5P9Q8 (Ovis aries)
Explore W5P9Q8 
Go to UniProtKB:  W5P9Q8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5P9Q8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase subunit B4IA [auth p]130Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for W5QF73 (Ovis aries)
Explore W5QF73 
Go to UniProtKB:  W5QF73
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5QF73
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13JA [auth q]144Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6P3E975 (Ovis aries)
Explore A0A6P3E975 
Go to UniProtKB:  A0A6P3E975
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P3E975
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial complex I, B17 subunitKA [auth r]128Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for W5PZE3 (Ovis aries)
Explore W5PZE3 
Go to UniProtKB:  W5PZE3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5PZE3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase subunit B7LA [auth s]137Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A8N7XJH2 (Ovis aries)
Explore A0A8N7XJH2 
Go to UniProtKB:  A0A8N7XJH2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8N7XJH2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:ubiquinone oxidoreductase subunit B9MA [auth t]179Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6P3E749 (Ovis aries)
Explore A0A6P3E749 
Go to UniProtKB:  A0A6P3E749
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P3E749
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrialNA [auth u]108Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A8N7XJB4 (Ovis aries)
Explore A0A8N7XJB4 
Go to UniProtKB:  A0A8N7XJB4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8N7XJB4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrialOA [auth v]186Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for W5Q1B0 (Ovis aries)
Explore W5Q1B0 
Go to UniProtKB:  W5Q1B0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5Q1B0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial complex I, ESSS subunitPA [auth w]154Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A836CQA7 (Ovis aries)
Explore A0A836CQA7 
Go to UniProtKB:  A0A836CQA7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A836CQA7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrialQA [auth x]76Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6P3EDV0 (Ovis aries)
Explore A0A6P3EDV0 
Go to UniProtKB:  A0A6P3EDV0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P3EDV0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1RA [auth y]58Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A7M4DUG1 (Ovis aries)
Explore A0A7M4DUG1 
Go to UniProtKB:  A0A7M4DUG1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7M4DUG1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-MWFESA [auth z]70Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6P9FRJ5 (Ovis aries)
Explore A0A6P9FRJ5 
Go to UniProtKB:  A0A6P9FRJ5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6P9FRJ5
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 12 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PC1
Query on PC1

Download Ideal Coordinates CCD File 
DB [auth 6],
FB [auth 9],
PB [auth L],
QB [auth L],
SB [auth M]
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C44 H88 N O8 P
NRJAVPSFFCBXDT-HUESYALOSA-N
3PE
Query on 3PE

Download Ideal Coordinates CCD File 
BB [auth 4]
EB [auth 6]
LB [auth A]
MB [auth H]
NB [auth J]
BB [auth 4],
EB [auth 6],
LB [auth A],
MB [auth H],
NB [auth J],
OB [auth L],
RB [auth M],
TB [auth V],
UB [auth V],
XB [auth o]
1,2-Distearoyl-sn-glycerophosphoethanolamine
C41 H82 N O8 P
LVNGJLRDBYCPGB-LDLOPFEMSA-N
NDP
Query on NDP

Download Ideal Coordinates CCD File 
JB [auth d]NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
NAI
Query on NAI

Download Ideal Coordinates CCD File 
VA [auth 1]1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
ZMP
Query on ZMP

Download Ideal Coordinates CCD File 
KB [auth j],
VB [auth X]
S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate
C25 H49 N2 O8 P S
HDTINWYIVVMRIN-HSZRJFAPSA-N
FMN
Query on FMN

Download Ideal Coordinates CCD File 
UA [auth 1]FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
SF4
Query on SF4

Download Ideal Coordinates CCD File 
CB [auth 6]
GB [auth 9]
HB [auth 9]
TA [auth 1]
XA [auth 3]
CB [auth 6],
GB [auth 9],
HB [auth 9],
TA [auth 1],
XA [auth 3],
YA [auth 3]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
AMP
Query on AMP

Download Ideal Coordinates CCD File 
WB [auth k]ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
MYR
Query on MYR

Download Ideal Coordinates CCD File 
YB [auth s]MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
FES
Query on FES

Download Ideal Coordinates CCD File 
WA [auth 2],
ZA [auth 3]
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
IB [auth b]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
K
Query on K

Download Ideal Coordinates CCD File 
AB [auth 3]POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Modified Residues  4 Unique
IDChains TypeFormula2D DiagramParent
2MR
Query on 2MR
D [auth 4]L-PEPTIDE LINKINGC8 H18 N4 O2ARG
AYA
Query on AYA
O [auth h]L-PEPTIDE LINKINGC5 H9 N O3ALA
FME
Query on FME
U [auth K]L-PEPTIDE LINKINGC6 H11 N O3 SMET
SEP
Query on SEP
DA [auth k]L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union101020697

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-21
    Type: Initial release
  • Version 1.1: 2022-09-28
    Changes: Database references
  • Version 1.2: 2022-10-05
    Changes: Database references